Version 2.77

Part Descriptions

LP129566-8   Bacteria identified based on 16S rRNA gene
Sequencing of the 16S rRNA gene is commonly used for taxonomic classification and identification of bacteria. The 16S gene is approximately 1500bp long and is universal in bacteria, allowing its relationships to be measured among all bacteria. Because it is universal among all bacteria, detection of 16S RNA can also be used to estimate bacterial load. The 16S sequence has a role in identifying bacteria that are atypical or rare that are unable to be identified by phenotypic tests alone. In general there is not enough variation in 16S sequence for its use in distinguishing strains for epidemiological purposes. Source: Regenstrief LOINC

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

Fully-Specified Name

Component
Bacteria identified based on 16S rRNA gene
Property
Prid
Time
Pt
System
XXX
Scale
Nom
Method
Sequencing

Additional Names

Short Name
Bacteria identified 16S rRNA Spec Seq
Display Name
Bacteria identified based on 16S rRNA gene Sequencing Nom (Specimen)
Consumer Name Alpha Get Info
Specimen Bacteria identified based on 16S rRNA gene Sequencing test

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.38
Last Updated
Version 2.73
Change Reason
Release 2.68: COMPONENT: Updated Component name to clarify that the bacteria identified is reported and based on sequencing the 16S rRNA gene.; Previous Releases: Changed method from Amplification/Sequencing because Amplification always occurs before sequencing
Order vs. Observation
Both
Common Test Rank Get Info
18733

Language Variants Get Info

Tag Language Translation
de-AT German (Austria) Synonyms: Bakterielle 16S rRNA Sequenzierung /SM
es-ES Spanish (Spain) Secuenciación del rRNA 16S bacteriano:Presencia o identidad:Punto temporal:XXX:Nom:Secuenciación
es-MX Spanish (Mexico) Bacterias identificadas según el gen de ARNr 16S:Presencia o identidad:Punto temporal:XXX:Nominal:Secuenciación
fr-CA French (Canada) Bactéries, Identifiés sur gène 16s ARN:Présence ou identité:Temps ponctuel:XXX:Nominal:Séquençage
fr-FR French (France) Bactérie identifiée par ARNr 16S:Identification:Ponctuel:Milieux divers:Résultat nominal:Séquençage
it-IT Italian (Italy) Sequenziamento batterico 16S rRNA:Prid:Pt:XXX:Nom:Sequenziamento
Synonyms: Microbiologia Presenza o Identità Punto nel tempo (episodio) Sequenziamento batterico di 16S rRNA
nl-NL Dutch (Netherlands) bacterie geïdentificeerd met 16S-rRNA-sequentiebepaling:identificator:moment:XXX:nominaal:sequencing
Synonyms: bacterie
tr-TR Turkish (Turkey) Bakteriyel 16S rRNA sekanslama:MevcKimlik:Zmlı:XXX:Snf:Sekanslama
Synonyms: Dizi tayini
uk-UA Ukrainian (Ukraine) Бактерії, ідентифіковані на основі гена 16S рРНК:Наявність або Ідентифікація:МоментЧасу:ХХХ:Категорійно:Секвенування
Synonyms: Bact; Bacteria identified 16S rRNA; Bacterial 16S rRNA sequencing; high-throughput sequencing; HTS; ID; Identity or presence; Infectious Disease; InfectiousDisease; Microbiology; Misc; Miscellaneous; Next generation sequencing; NGS; Nominal; Other; Point in time; Random; rDNA; ribosomal RNA; Spec; To be specified in another part of the message; Unspecified
zh-CN Chinese (China) 基于 16S rRNA 基因所鉴定出的细菌:存在与否或特征标识:时间点:XXX:名义型:序列测定
Synonyms: 不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 存在;存在与否;特征标识;身份;身份标识 已明确的细菌 已确认的细菌 已鉴别的细菌 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 核蛋白体 RNA 核蛋白体 RNA（Ribosomal RNA，RRNA） 核蛋白体核糖核酸 核醣体 RNA 细菌 16S rRNA 序列测定;细菌 16S 核糖体核糖核酸序列测定;细菌 16S rRNA 序列分析;细菌 16S rRNA 测序 细菌类;菌 经明确的细菌 经确认的细菌 经鉴别的细菌 经鉴定的细菌 遗传基因;遗传因子;吉恩;生物基因

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CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=66885-5